CDBProm v2.0 — Local Predictions with Docker
This is a tutorial to run predictions from our official Docker volume.
There are no restrictions on the number of sequences that can be run.
Parameters
(Mandatory) input_file: Local path to te input file
(Optional)'--output_file', '-o': Name of the output file
(Optional)'--step_size', '-s': Value of the desired step size (used for sequences with length >60)
Run with results on terminal (basic)
docker run --rm -v \
/path/to/your/fasta:/data \
sganzg/local_prediction_tool \
/data/your_fasta.fasta
Run saving results as a csv in the same directory of your input file
docker run --rm -v \
/path/to/your/fasta:/data \
sganzg/local_prediction_tool \
/data/your_fasta.fasta \
-o /data/output.csv
Run inputting the desired value of step size (eg 5) for sequences with length > 60
docker run --rm -v \
/path/to/your/fasta:/data \
sganzg/local_prediction_tool \
/data/your_fasta.fasta \
-o /data/output.csv -s 5